Categorized views of R package repositories


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Documentation for package ‘biocViews’ version 1.71.1

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biocViews-package Categorized views of R package repositories
BiocView-class Class "BiocView"
biocViews Categorized views of R package repositories
biocViewsVocab Bioconductor Task Views Vocabulary Data
bvPackageTable-class Class "BiocView"
bvParentViews-class Class "BiocView"
bvSubViews-class Class "BiocView"
bvTitle-class Class "BiocView"
coerce-method Class "BiocView"
extractCitations Extract Rd man pages and build pdf reference manuals from local package repository
extractHTMLDocuments Extract pdf vignettes from local package repository
extractManuals Extract Rd man pages and build pdf reference manuals from local package repository
extractNEWS Extract NEWS files from source package tarballs
extractTopLevelFiles Extract files from the top level of source package tarballs
extractVignettes Extract pdf vignettes from local package repository
genReposControlFiles Generate CRAN-style repository control files
getBiocSubViews Build a list of BiocView objects from a package repository
getBiocViews Build a list of BiocView objects from a package repository
getCurrentbiocViews Get a list of biocViews for each branch
getPackageDescriptions Retrieve list of package titles and print package Description
getPackageNEWS Retrieve and print package NEWS
getPackageTitles Retrieve list of package titles and print package Description
getPacksAndViews Parse VIEWS file for views and packages
getSubTerms Retrieve a term and its children from a vocab DAG
guessPackageType Guess Package Type (Software, ExperimentData, AnnotationData) using existing biocViews.
htmlDoc Create a complete HTML document representation of an object
htmlDoc-method Class "BiocView"
htmlDoc-method Class "Htmlized"
htmlDoc-method Class "PackageDetail"
htmlDoc-method Class "RepositoryDetail"
htmlFilename Return a filename for an object's HTML representation
htmlFilename-method Class "BiocView"
htmlFilename-method Class "PackageDetail"
htmlFilename-method Class "RepositoryDetail"
htmlFilename-method Return a filename for an object's HTML representation
Htmlized-class Class "Htmlized"
htmlValue HTML Representation of an Object
htmlValue-method Class "BiocView"
htmlValue-method Class "PackageDetail"
htmlValue-method Class "RepositoryDetail"
makeVocInfo Parse VIEWS file for views and packages
PackageDetail-class Class "PackageDetail"
pdAuthorMaintainerInfo-class Class "PackageDetail"
pdDescriptionInfo-class Class "PackageDetail"
pdDetailsInfo-class Class "PackageDetail"
pdDownloadInfo-class Class "PackageDetail"
pdVignetteInfo-class Class "PackageDetail"
pdVigsAndDownloads-class Class "PackageDetail"
permulist Parse VIEWS file for views and packages
printNEWS Retrieve and print package NEWS
pump Parse VIEWS file for views and packages
rdPackageTable-class Class "RepositoryDetail"
recommendBiocViews Recommend biocViews for an existing Package.
recommendPackages Recommend Packages using existing biocViews.
RepositoryDetail-class Class "RepositoryDetail"
show-method Class "BiocView"
tellSubTop Parse VIEWS file for views and packages
tellSuperTop Parse VIEWS file for views and packages
validate_bioc_views Validate a package's biocViews.
validation_tests Validate a package's biocViews.
writeBiocViews Write a list of BiocView objects to HTML
writeHtmlDoc Write an XML DOM containing HTML to a file
writePackageDetailHtml Write HTML files for packages in a CRAN-style repository
writeRepositoryHtml Write package descriptions and a repository index as HTML
writeRFilesFromVignettes Write R files from vignettes
writeTopLevelView Write the view for the root of a vocabulary to disk
write_REPOSITORY Write a REPOSITORY control file for a CRAN-style package repository
write_SYMBOLS Write a SYMBOLS file
write_VIEWS Write a VIEWS control file for a CRAN-style package repository